J4_7SYN_002

3D structure

PDB id

7SYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAG*CGAAAGU*ACCAUAAACGAUG*UU

Length

25 nucleotides

Bulged bases

7SYN|1|2|A|672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYN|1|2|A|671
7SYN|1|2|A|672
7SYN|1|2|G|673
*
7SYN|1|2|C|1032
7SYN|1|2|G|1033
7SYN|1|2|A|1034
7SYN|1|2|A|1035
7SYN|1|2|A|1036
7SYN|1|2|G|1037
7SYN|1|2|U|1038
*
7SYN|1|2|A|1077
7SYN|1|2|C|1078
7SYN|1|2|C|1079
7SYN|1|2|A|1080
7SYN|1|2|U|1081
7SYN|1|2|A|1082
7SYN|1|2|A|1083
7SYN|1|2|A|1084
7SYN|1|2|C|1085
7SYN|1|2|G|1086
7SYN|1|2|A|1087
7SYN|1|2|U|1088
7SYN|1|2|G|1089
*
7SYN|1|2|U|1160
7SYN|1|2|U|1161

Current chains

Chain 2

18S rRNA

Nearby chains

Chain M

uS17

Chain O

uS15

Chain P

uS11

Chain X

uS8

Chain Y

uS12

Chain b

eS26

Chain n

eL41