J4_7SYO_003

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAGAG*UA*UAGGGUG*CC

Length

16 nucleotides

Bulged bases

7SYO|1|z|A|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|z|G|133
7SYO|1|z|A|134
7SYO|1|z|G|135
7SYO|1|z|A|136
7SYO|1|z|G|137
*
7SYO|1|z|U|287
7SYO|1|z|A|288
*
7SYO|1|z|U|297
7SYO|1|z|A|298
7SYO|1|z|G|299
7SYO|1|z|G|300
7SYO|1|z|G|301
7SYO|1|z|U|302
7SYO|1|z|G|303
*
7SYO|1|z|C|314
7SYO|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain S

eS17

Chain b

eS26