J4_7SYP_001

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

7SYP|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7SYP_001 not in the Motif Atlas

Homologous match to J4_8C3A_021

Geometric discrepancy: 0.1674

The information below is about J4_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78231.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7SYP|1|2|C|98
7SYP|1|2|A|99
7SYP|1|2|U|100
7SYP|1|2|U|101
7SYP|1|2|A|102
7SYP|1|2|A|103
7SYP|1|2|A|104
7SYP|1|2|U|105
7SYP|1|2|C|106
*
7SYP|1|2|G|355
7SYP|1|2|C|356
7SYP|1|2|C|357
*
7SYP|1|2|G|405
7SYP|1|2|U|406
7SYP|1|2|G|407
7SYP|1|2|A|408
7SYP|1|2|C|409
*
7SYP|1|2|G|431
7SYP|1|2|G|432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain J

eS8

Chain M

uS17

Chain Y

uS12