J4_7SYQ_001

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAUUAAAUC*GCC*GUGAC*GGA

Length

21 nucleotides

Bulged bases

7SYQ|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|U|97
7SYQ|1|2|C|98
7SYQ|1|2|A|99
7SYQ|1|2|U|100
7SYQ|1|2|U|101
7SYQ|1|2|A|102
7SYQ|1|2|A|103
7SYQ|1|2|A|104
7SYQ|1|2|U|105
7SYQ|1|2|C|106
*
7SYQ|1|2|G|355
7SYQ|1|2|C|356
7SYQ|1|2|C|357
*
7SYQ|1|2|G|405
7SYQ|1|2|U|406
7SYQ|1|2|G|407
7SYQ|1|2|A|408
7SYQ|1|2|C|409
*
7SYQ|1|2|G|431
7SYQ|1|2|G|432
7SYQ|1|2|A|433

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain J

eS8

Chain K

uS4

Chain M

uS17

Chain Y

uS12