J4_7SYR_006

3D structure

PDB id

7SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAC*GA*UUG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYR|1|z|G|153
7SYR|1|z|A|154
7SYR|1|z|A|155
7SYR|1|z|C|156
*
7SYR|1|z|G|171
7SYR|1|z|A|172
*
7SYR|1|z|U|227
7SYR|1|z|U|228
7SYR|1|z|G|229
*
7SYR|1|z|C|238
7SYR|1|z|C|239

Current chains

Chain z

HCV IRES

Nearby chains

Chain I

eS7

Chain c

eS27