J4_7SYT_001

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UCAUUAAAUC*GCC*GUGAC*GGA

Length

21 nucleotides

Bulged bases

7SYT|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|2|U|97
7SYT|1|2|C|98
7SYT|1|2|A|99
7SYT|1|2|U|100
7SYT|1|2|U|101
7SYT|1|2|A|102
7SYT|1|2|A|103
7SYT|1|2|A|104
7SYT|1|2|U|105
7SYT|1|2|C|106
*
7SYT|1|2|G|355
7SYT|1|2|C|356
7SYT|1|2|C|357
*
7SYT|1|2|G|405
7SYT|1|2|U|406
7SYT|1|2|G|407
7SYT|1|2|A|408
7SYT|1|2|C|409
*
7SYT|1|2|G|431
7SYT|1|2|G|432
7SYT|1|2|A|433

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain J

eS8

Chain K

uS4

Chain M

uS17

Chain Y

uS12