J4_7SYT_002
3D structure
- PDB id
- 7SYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- AAG*CGAAAGU*ACCAUAAACGAUG*UU
- Length
- 25 nucleotides
- Bulged bases
- 7SYT|1|2|A|672, 7SYT|1|2|A|1083, 7SYT|1|2|C|1085, 7SYT|1|2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYT|1|2|A|671
7SYT|1|2|A|672
7SYT|1|2|G|673
*
7SYT|1|2|C|1032
7SYT|1|2|G|1033
7SYT|1|2|A|1034
7SYT|1|2|A|1035
7SYT|1|2|A|1036
7SYT|1|2|G|1037
7SYT|1|2|U|1038
*
7SYT|1|2|A|1077
7SYT|1|2|C|1078
7SYT|1|2|C|1079
7SYT|1|2|A|1080
7SYT|1|2|U|1081
7SYT|1|2|A|1082
7SYT|1|2|A|1083
7SYT|1|2|A|1084
7SYT|1|2|C|1085
7SYT|1|2|G|1086
7SYT|1|2|A|1087
7SYT|1|2|U|1088
7SYT|1|2|G|1089
*
7SYT|1|2|U|1160
7SYT|1|2|U|1161
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain M
- uS17
- Chain O
- uS15
- Chain P
- uS11
- Chain X
- uS8
- Chain Y
- uS12
- Chain b
- eS26 (S26)
- Chain n
- 60s ribosomal protein l41
Coloring options: