J4_7SYT_004

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAGAG*UA*UAGGGUG*CC

Length

16 nucleotides

Bulged bases

7SYT|1|z|A|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|z|G|133
7SYT|1|z|A|134
7SYT|1|z|G|135
7SYT|1|z|A|136
7SYT|1|z|G|137
*
7SYT|1|z|U|287
7SYT|1|z|A|288
*
7SYT|1|z|U|297
7SYT|1|z|A|298
7SYT|1|z|G|299
7SYT|1|z|G|300
7SYT|1|z|G|301
7SYT|1|z|U|302
7SYT|1|z|G|303
*
7SYT|1|z|C|314
7SYT|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain b

eS26 (S26)