J4_7SYX_001

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCAUUAAAUC*GCC*GUGAC*GGA

Length

21 nucleotides

Bulged bases

7SYX|1|2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|U|97
7SYX|1|2|C|98
7SYX|1|2|A|99
7SYX|1|2|U|100
7SYX|1|2|U|101
7SYX|1|2|A|102
7SYX|1|2|A|103
7SYX|1|2|A|104
7SYX|1|2|U|105
7SYX|1|2|C|106
*
7SYX|1|2|G|355
7SYX|1|2|C|356
7SYX|1|2|C|357
*
7SYX|1|2|G|405
7SYX|1|2|U|406
7SYX|1|2|G|407
7SYX|1|2|A|408
7SYX|1|2|C|409
*
7SYX|1|2|G|431
7SYX|1|2|G|432
7SYX|1|2|A|433

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8

Chain K

uS4

Chain M

uS17

Chain Y

uS12