J4_7SYX_008

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGAG*UA*UAGGGUG*CC

Length

16 nucleotides

Bulged bases

7SYX|1|z|A|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|z|G|133
7SYX|1|z|A|134
7SYX|1|z|G|135
7SYX|1|z|A|136
7SYX|1|z|G|137
*
7SYX|1|z|U|287
7SYX|1|z|A|288
*
7SYX|1|z|U|297
7SYX|1|z|A|298
7SYX|1|z|G|299
7SYX|1|z|G|300
7SYX|1|z|G|301
7SYX|1|z|U|302
7SYX|1|z|G|303
*
7SYX|1|z|C|314
7SYX|1|z|C|315

Current chains

Chain z

HCV IRES

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain C

eS1

Chain b

eS26