J4_7TM3_003

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCU*GCGCACGGGG

Length

30 nucleotides

Bulged bases

7TM3|1|K|G|959, 7TM3|1|K|C|972, 7TM3|1|K|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|712
7TM3|1|K|C|713
*
7TM3|1|K|G|955
7TM3|1|K|A|956
7TM3|1|K|G|957
7TM3|1|K|G|958
7TM3|1|K|G|959
7TM3|1|K|A|960
7TM3|1|K|G|961
*
7TM3|1|K|U|971
7TM3|1|K|G|971|||A
7TM3|1|K|C|972
7TM3|1|K|G|973
7TM3|1|K|C|974
7TM3|1|K|C|975
7TM3|1|K|G|976
7TM3|1|K|C|977
7TM3|1|K|G|978
7TM3|1|K|C|979
7TM3|1|K|U|980
*
7TM3|1|K|G|1275
7TM3|1|K|C|1276
7TM3|1|K|G|1277
7TM3|1|K|C|1278
7TM3|1|K|A|1279
7TM3|1|K|C|1280
7TM3|1|K|G|1281
7TM3|1|K|G|1282
7TM3|1|K|G|1283
7TM3|1|K|G|1284

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7

Chain e

eL32