J4_7TM3_006

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7TM3|1|K|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|G|2618
7TM3|1|K|G|2619
*
7TM3|1|K|U|2637
7TM3|1|K|G|2638
7TM3|1|K|U|2639
7TM3|1|K|G|2640
7TM3|1|K|A|2641
7TM3|1|K|A|2642
*
7TM3|1|K|U|2692
7TM3|1|K|G|2693
7TM3|1|K|G|2694
7TM3|1|K|A|2695
7TM3|1|K|A|2696
7TM3|1|K|A|2697
7TM3|1|K|G|2698
*
7TM3|1|K|U|2718
7TM3|1|K|C|2719

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

eL22

Chain g

60S ribosomal protein L34

Chain k

60S ribosomal protein L38