J4_7TM3_008

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7TM3|1|K|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TM3_008 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1245

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|3696
7TM3|1|K|U|3697
7TM3|1|K|G|3698
*
7TM3|1|K|C|3752
7TM3|1|K|G|3753
*
7TM3|1|K|C|3771
7TM3|1|K|U|3772
7TM3|1|K|U|3773
7TM3|1|K|A|3774
7TM3|1|K|A|3775
7TM3|1|K|G|3776
7TM3|1|K|G|3777
7TM3|1|K|U|3778
7TM3|1|K|A|3779
7TM3|1|K|G|3780
*
7TM3|1|K|U|3814
7TM3|1|K|G|3815
7TM3|1|K|A|3816
7TM3|1|K|A|3817
7TM3|1|K|U|3818
7TM3|1|K|G|3819

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain n

eL41

Chain q

Transfer RNA; tRNA