J4_7TM3_010

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

7TM3|1|K|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TM3_010 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1801

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|4231
7TM3|1|K|U|4232
7TM3|1|K|A|4233
7TM3|1|K|A|4234
7TM3|1|K|G|4235
*
7TM3|1|K|U|4289
7TM3|1|K|U|4290
7TM3|1|K|G|4291
7TM3|1|K|A|4292
7TM3|1|K|U|4293
*
7TM3|1|K|A|4317
7TM3|1|K|C|4318
7TM3|1|K|C|4319
*
7TM3|1|K|G|4328
7TM3|1|K|G|4329
7TM3|1|K|G|4330

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain b

eL29

Chain o

eL42