J4_7TOP_005

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOP_005 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.071

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TOP|1|A25S|G|1674
7TOP|1|A25S|G|1675
*
7TOP|1|A25S|C|1693
7TOP|1|A25S|U|1694
*
7TOP|1|A25S|A|1752
7TOP|1|A25S|G|1753
*
7TOP|1|A25S|U|1772
7TOP|1|A25S|C|1773

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL22

60S ribosomal protein L22-A

Chain AL34

60S ribosomal protein L34-A

Chain AL38

RPL38 isoform 1