J4_7TOP_007

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7TOP|1|A25S|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOP_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.2019

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOP|1|A25S|C|2192
7TOP|1|A25S|U|2193
7TOP|1|A25S|G|2194
*
7TOP|1|A25S|C|2248
7TOP|1|A25S|G|2249
*
7TOP|1|A25S|C|2267
7TOP|1|A25S|U|2268
7TOP|1|A25S|U|2269
7TOP|1|A25S|A|2270
7TOP|1|A25S|A|2271
7TOP|1|A25S|G|2272
7TOP|1|A25S|G|2273
7TOP|1|A25S|U|2274
7TOP|1|A25S|A|2275
7TOP|1|A25S|G|2276
*
7TOP|1|A25S|U|2310
7TOP|1|A25S|G|2311
7TOP|1|A25S|A|2312
7TOP|1|A25S|A|2313
7TOP|1|A25S|U|2314
7TOP|1|A25S|G|2315

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL41

60S ribosomal protein L41-A