J4_7TOP_010

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

7TOP|1|APTN|U|8, 7TOP|1|APTN|U|47, 7TOP|1|APTN|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7TOP_010 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.2141

The information below is about J4_6UFG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7TOP|1|APTN|G|7
7TOP|1|APTN|U|8
7TOP|1|APTN|G|9
7TOP|1|APTN|G|10
*
7TOP|1|APTN|C|25
7TOP|1|APTN|G|26
7TOP|1|APTN|U|27
*
7TOP|1|APTN|A|43
7TOP|1|APTN|A|44
7TOP|1|APTN|G|45
7TOP|1|APTN|G|46
7TOP|1|APTN|U|47
7TOP|1|APTN|C|48
7TOP|1|APTN|G|49
*
7TOP|1|APTN|C|65
7TOP|1|APTN|C|66

Current chains

Chain APTN

tRNAfMet

Nearby chains

Chain AL42

60S ribosomal protein L42-A