J4_7TOR_004

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

7TOR|1|A28S|C|216, 7TOR|1|A28S|C|217, 7TOR|1|A28S|A|218, 7TOR|1|A28S|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|196
7TOR|1|A28S|A|197
7TOR|1|A28S|A|198
7TOR|1|A28S|G|199
*
7TOR|1|A28S|C|215
7TOR|1|A28S|C|216
7TOR|1|A28S|C|217
7TOR|1|A28S|A|218
7TOR|1|A28S|G|219
7TOR|1|A28S|C|220
7TOR|1|A28S|C|221
7TOR|1|A28S|C|222
*
7TOR|1|A28S|G|226
7TOR|1|A28S|A|227
7TOR|1|A28S|C|228
*
7TOR|1|A28S|G|240
7TOR|1|A28S|G|241
7TOR|1|A28S|U|242
7TOR|1|A28S|A|243
7TOR|1|A28S|G|244

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL26

60S ribosomal protein L26