J4_7TOR_007

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

27 nucleotides

Bulged bases

7TOR|1|A28S|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|A|2551
7TOR|1|A28S|G|2552
7TOR|1|A28S|A|2553
7TOR|1|A28S|U|2554
7TOR|1|A28S|G|2555
*
7TOR|1|A28S|C|2572
7TOR|1|A28S|A|2573
7TOR|1|A28S|G|2574
7TOR|1|A28S|U|2575
7TOR|1|A28S|G|2576
*
7TOR|1|A28S|C|2585
7TOR|1|A28S|G|2586
7TOR|1|A28S|A|2587
7TOR|1|A28S|C|2588
7TOR|1|A28S|C|2589
*
7TOR|1|A28S|G|2756
7TOR|1|A28S|A|2757
7TOR|1|A28S|G|2758
7TOR|1|A28S|G|2759
7TOR|1|A28S|G|2760
7TOR|1|A28S|U|2761
7TOR|1|A28S|G|2762
7TOR|1|A28S|U|2763
7TOR|1|A28S|A|2764
7TOR|1|A28S|A|2765
7TOR|1|A28S|A|2766
7TOR|1|A28S|U|2767

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27

Chain AL34

60S ribosomal protein L34