J4_7TUT_002

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

7TUT|1|K|C|216, 7TUT|1|K|C|217, 7TUT|1|K|A|218, 7TUT|1|K|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|C|196
7TUT|1|K|A|197
7TUT|1|K|A|198
7TUT|1|K|G|199
*
7TUT|1|K|C|215
7TUT|1|K|C|216
7TUT|1|K|C|217
7TUT|1|K|A|218
7TUT|1|K|G|219
7TUT|1|K|C|220
7TUT|1|K|C|221
7TUT|1|K|C|222
*
7TUT|1|K|G|226
7TUT|1|K|A|227
7TUT|1|K|C|228
*
7TUT|1|K|G|240
7TUT|1|K|G|241
7TUT|1|K|U|242
7TUT|1|K|A|243
7TUT|1|K|G|244

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24