J4_7TUT_003

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCU*GCGCACGGGG

Length

30 nucleotides

Bulged bases

7TUT|1|K|G|959, 7TUT|1|K|C|972, 7TUT|1|K|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|C|712
7TUT|1|K|C|713
*
7TUT|1|K|G|955
7TUT|1|K|A|956
7TUT|1|K|G|957
7TUT|1|K|G|958
7TUT|1|K|G|959
7TUT|1|K|A|960
7TUT|1|K|G|961
*
7TUT|1|K|U|971
7TUT|1|K|G|971|||A
7TUT|1|K|C|972
7TUT|1|K|G|973
7TUT|1|K|C|974
7TUT|1|K|C|975
7TUT|1|K|G|976
7TUT|1|K|C|977
7TUT|1|K|G|978
7TUT|1|K|C|979
7TUT|1|K|U|980
*
7TUT|1|K|G|1275
7TUT|1|K|C|1276
7TUT|1|K|G|1277
7TUT|1|K|C|1278
7TUT|1|K|A|1279
7TUT|1|K|C|1280
7TUT|1|K|G|1281
7TUT|1|K|G|1282
7TUT|1|K|G|1283
7TUT|1|K|G|1284

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7

Chain e

eL32