3D structure

PDB id
7TUT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
7TUT|1|K|U|3818
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7TUT_008 not in the Motif Atlas
Homologous match to J4_8C3A_007
Geometric discrepancy: 0.1267
The information below is about J4_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7TUT|1|K|C|3696
7TUT|1|K|U|3697
7TUT|1|K|G|3698
*
7TUT|1|K|C|3752
7TUT|1|K|G|3753
*
7TUT|1|K|C|3771
7TUT|1|K|U|3772
7TUT|1|K|U|3773
7TUT|1|K|A|3774
7TUT|1|K|A|3775
7TUT|1|K|G|3776
7TUT|1|K|G|3777
7TUT|1|K|U|3778
7TUT|1|K|A|3779
7TUT|1|K|G|3780
*
7TUT|1|K|U|3814
7TUT|1|K|G|3815
7TUT|1|K|A|3816
7TUT|1|K|A|3817
7TUT|1|K|U|3818
7TUT|1|K|G|3819

Current chains

Chain K
28S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein L8
Chain n
eL41
Chain q
Transfer RNA; tRNA

Coloring options:


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