3D structure

PDB id
7U2J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAAG*CGCC*GAG*CGUAG
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7U2J_002 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.0545
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

7U2J|1|1A|C|297
7U2J|1|1A|G|298
7U2J|1|1A|A|299
7U2J|1|1A|A|300
7U2J|1|1A|G|301
*
7U2J|1|1A|C|316
7U2J|1|1A|G|317
7U2J|1|1A|C|318
7U2J|1|1A|C|319
*
7U2J|1|1A|G|323
7U2J|1|1A|A|324
7U2J|1|1A|G|325
*
7U2J|1|1A|C|337
7U2J|1|1A|G|338
7U2J|1|1A|U|339
7U2J|1|1A|A|340
7U2J|1|1A|G|341

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1F
50S ribosomal protein L4
Chain 1Y
50S ribosomal protein L24

Coloring options:


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