J4_7U2J_015
3D structure
- PDB id
- 7U2J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7U2J|1|1x|4SU|8, 7U2J|1|1x|U|47, 7U2J|1|1x|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7U2J_015 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.0638
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7U2J|1|1x|G|7
7U2J|1|1x|4SU|8
7U2J|1|1x|G|9
7U2J|1|1x|G|10
*
7U2J|1|1x|C|25
7U2J|1|1x|G|26
7U2J|1|1x|U|27
*
7U2J|1|1x|A|43
7U2J|1|1x|A|44
7U2J|1|1x|G|45
7U2J|1|1x|G|46
7U2J|1|1x|U|47
7U2J|1|1x|C|48
7U2J|1|1x|G|49
*
7U2J|1|1x|C|65
7U2J|1|1x|C|66
Current chains
- Chain 1x
- P-site Peptidyl-tRNA fMAC-NH-tRNAmet RNA-part
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1m
- 30S ribosomal protein S13
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