J4_7U2J_024

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

7U2J|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7U2J_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0593

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7U2J|1|2A|U|1833
7U2J|1|2A|U|1834
7U2J|1|2A|G|1835
*
7U2J|1|2A|C|1905
7U2J|1|2A|G|1906
*
7U2J|1|2A|C|1924
7U2J|1|2A|C|1925
7U2J|1|2A|U|1926
7U2J|1|2A|A|1927
7U2J|1|2A|A|1928
7U2J|1|2A|G|1929
7U2J|1|2A|G|1930
7U2J|1|2A|U|1931
7U2J|1|2A|A|1932
7U2J|1|2A|G|1933
*
7U2J|1|2A|C|1967
7U2J|1|2A|G|1968
7U2J|1|2A|A|1969
7U2J|1|2A|A|1970
7U2J|1|2A|A|1971
7U2J|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA