J4_7UCJ_004

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7UCJ|1|5|A|2366, 7UCJ|1|5|U|2369, 7UCJ|1|5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCJ|1|5|OMC|2365
7UCJ|1|5|A|2366
7UCJ|1|5|A|2367
7UCJ|1|5|A|2368
7UCJ|1|5|U|2369
7UCJ|1|5|A|2370
7UCJ|1|5|U|2371
*
7UCJ|1|5|A|2389
7UCJ|1|5|G|2390
7UCJ|1|5|G|2391
*
7UCJ|1|5|C|2824
7UCJ|1|5|A|2825
7UCJ|1|5|U|2826
7UCJ|1|5|G|2827
7UCJ|1|5|U|2828
7UCJ|1|5|U|2829
*
7UCJ|1|5|A|3856
7UCJ|1|5|G|3857

Current chains

Chain 5

28s rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain d

60S ribosomal protein L31