J4_7UCJ_006

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7UCJ|1|5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UCJ|1|5|G|2618
7UCJ|1|5|G|2619
*
7UCJ|1|5|U|2637
7UCJ|1|5|G|2638
7UCJ|1|5|U|2639
7UCJ|1|5|G|2640
7UCJ|1|5|A|2641
7UCJ|1|5|A|2642
*
7UCJ|1|5|U|2692
7UCJ|1|5|G|2693
7UCJ|1|5|G|2694
7UCJ|1|5|A|2695
7UCJ|1|5|A|2696
7UCJ|1|5|A|2697
7UCJ|1|5|G|2698
*
7UCJ|1|5|U|2718
7UCJ|1|5|C|2719

Current chains

Chain 5

28s rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22

Chain g

60S ribosomal protein L34

Chain k

60S ribosomal protein L38