J4_7UCK_010
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAG*UUGA(PSU)*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7UCK|1|5|A|4234
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UCK_010 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.2073
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7UCK|1|5|C|4231
7UCK|1|5|U|4232
7UCK|1|5|A|4233
7UCK|1|5|A|4234
7UCK|1|5|G|4235
*
7UCK|1|5|U|4289
7UCK|1|5|U|4290
7UCK|1|5|G|4291
7UCK|1|5|A|4292
7UCK|1|5|PSU|4293
*
7UCK|1|5|A|4317
7UCK|1|5|C|4318
7UCK|1|5|C|4319
*
7UCK|1|5|G|4328
7UCK|1|5|G|4329
7UCK|1|5|G|4330
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a
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