J4_7UG7_005

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UG7_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0703

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7UG7|1|23|G|297
7UG7|1|23|G|298
7UG7|1|23|A|299
7UG7|1|23|A|300
7UG7|1|23|G|301
*
7UG7|1|23|C|316
7UG7|1|23|G|317
7UG7|1|23|C|318
7UG7|1|23|G|319
*
7UG7|1|23|C|323
7UG7|1|23|A|324
7UG7|1|23|G|325
*
7UG7|1|23|C|337
7UG7|1|23|G|338
7UG7|1|23|U|339
7UG7|1|23|A|340
7UG7|1|23|C|341

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LX

50S ribosomal protein L24