J4_7UG7_015
3D structure
- PDB id
- 7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAG(G7M)UCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7UG7|1|Dt|4SU|8
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UG7_015 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.2512
- The information below is about J4_7VNV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7UG7|1|Dt|G|7
7UG7|1|Dt|4SU|8
7UG7|1|Dt|G|9
7UG7|1|Dt|G|10
*
7UG7|1|Dt|C|26
7UG7|1|Dt|G|27
7UG7|1|Dt|U|28
*
7UG7|1|Dt|A|44
7UG7|1|Dt|A|45
7UG7|1|Dt|G|46
7UG7|1|Dt|G7M|47
7UG7|1|Dt|U|48
7UG7|1|Dt|C|49
7UG7|1|Dt|G|50
*
7UG7|1|Dt|C|66
7UG7|1|Dt|C|67
Current chains
- Chain Dt
- tRNA-fMet
Nearby chains
- Chain 16
- Small subunit ribosomal RNA; SSU rRNA
- Chain Lg
- 50S ribosomal protein L33
- Chain Pt
- Transfer RNA; tRNA
- Chain SM
- 30S ribosomal protein S13
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