J4_7UNW_005

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*AACCGUAC

Length

21 nucleotides

Bulged bases

7UNW|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UNW_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.083

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7UNW|1|A|G|1297
7UNW|1|A|G|1298
7UNW|1|A|U|1299
7UNW|1|A|U|1300
7UNW|1|A|C|1301
*
7UNW|1|A|G|1325
7UNW|1|A|G|1326
7UNW|1|A|U|1327
7UNW|1|A|U|1328
7UNW|1|A|A|1329
7UNW|1|A|G|1330
*
7UNW|1|A|C|1391
7UNW|1|A|U|1392
*
7UNW|1|A|A|1587
7UNW|1|A|A|1588
7UNW|1|A|C|1589
7UNW|1|A|C|1590
7UNW|1|A|G|1591
7UNW|1|A|U|1592
7UNW|1|A|A|1593
7UNW|1|A|C|1594

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain V

50S ribosomal protein L23