J4_7UNW_009
3D structure
- PDB id
- 7UNW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7UNW|1|A|U|1958
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UNW_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0922
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7UNW|1|A|C|1820
7UNW|1|A|U|1821
7UNW|1|A|2MG|1822
*
7UNW|1|A|C|1892
7UNW|1|A|G|1893
*
7UNW|1|A|C|1911
7UNW|1|A|C|1912
7UNW|1|A|U|1913
7UNW|1|A|A|1914
7UNW|1|A|A|1915
7UNW|1|A|G|1916
7UNW|1|A|G|1917
7UNW|1|A|U|1918
7UNW|1|A|A|1919
7UNW|1|A|G|1920
*
7UNW|1|A|C|1954
7UNW|1|A|G|1955
7UNW|1|A|A|1956
7UNW|1|A|A|1957
7UNW|1|A|U|1958
7UNW|1|A|G|1959
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- Transfer RNA; tRNA
Coloring options: