J4_7UVV_002

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAC*GAAC*GAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVV_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1008

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7UVV|1|A|G|299
7UVV|1|A|G|300
7UVV|1|A|A|301
7UVV|1|A|A|302
7UVV|1|A|C|303
*
7UVV|1|A|G|318
7UVV|1|A|A|319
7UVV|1|A|A|320
7UVV|1|A|C|321
*
7UVV|1|A|G|325
7UVV|1|A|A|326
7UVV|1|A|G|327
*
7UVV|1|A|C|339
7UVV|1|A|G|340
7UVV|1|A|U|341
7UVV|1|A|A|342
7UVV|1|A|C|343

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24