J4_7UVW_002

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGAAC*GAAC*GAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVW_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1018

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7UVW|1|A|G|299
7UVW|1|A|G|300
7UVW|1|A|A|301
7UVW|1|A|A|302
7UVW|1|A|C|303
*
7UVW|1|A|G|318
7UVW|1|A|A|319
7UVW|1|A|A|320
7UVW|1|A|C|321
*
7UVW|1|A|G|325
7UVW|1|A|A|326
7UVW|1|A|G|327
*
7UVW|1|A|C|339
7UVW|1|A|G|340
7UVW|1|A|U|341
7UVW|1|A|A|342
7UVW|1|A|C|343

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24