J4_7UVW_009

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7UVW|1|A|U|1967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7UVW_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1577

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7UVW|1|A|C|1829
7UVW|1|A|U|1830
7UVW|1|A|G|1831
*
7UVW|1|A|C|1901
7UVW|1|A|G|1902
*
7UVW|1|A|C|1920
7UVW|1|A|C|1921
7UVW|1|A|U|1922
7UVW|1|A|A|1923
7UVW|1|A|A|1924
7UVW|1|A|G|1925
7UVW|1|A|G|1926
7UVW|1|A|U|1927
7UVW|1|A|A|1928
7UVW|1|A|G|1929
*
7UVW|1|A|C|1963
7UVW|1|A|G|1964
7UVW|1|A|A|1965
7UVW|1|A|A|1966
7UVW|1|A|U|1967
7UVW|1|A|G|1968

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA