J4_7UVZ_015
3D structure
- PDB id
- 7UVZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.21 Å
Loop
- Sequence
- G(4SU)AG*CAC*GGGGUCA*UC
- Length
- 16 nucleotides
- Bulged bases
- 7UVZ|1|v|4SU|8, 7UVZ|1|v|U|48, 7UVZ|1|v|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7UVZ_015 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.2588
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7UVZ|1|v|G|7
7UVZ|1|v|4SU|8
7UVZ|1|v|A|9
7UVZ|1|v|G|10
*
7UVZ|1|v|C|26
7UVZ|1|v|A|27
7UVZ|1|v|C|28
*
7UVZ|1|v|G|44
7UVZ|1|v|G|45
7UVZ|1|v|G|46
7UVZ|1|v|G|47
7UVZ|1|v|U|48
7UVZ|1|v|C|49
7UVZ|1|v|A|50
*
7UVZ|1|v|U|66
7UVZ|1|v|C|67
Current chains
- Chain v
- tRNA-met
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
Coloring options: