J4_7V08_007
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- (PSU)(OMU)GA*UUUGGCUGG*UAU*AAAA
- Length
- 20 nucleotides
- Bulged bases
- 7V08|1|1|G|2418, 7V08|1|1|A|2802
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7V08|1|1|PSU|2416
7V08|1|1|OMU|2417
7V08|1|1|G|2418
7V08|1|1|A|2419
*
7V08|1|1|U|2611
7V08|1|1|U|2612
7V08|1|1|U|2613
7V08|1|1|G|2614
7V08|1|1|G|2615
7V08|1|1|C|2616
7V08|1|1|U|2617
7V08|1|1|G|2618
7V08|1|1|G|2619
*
7V08|1|1|U|2757
7V08|1|1|A|2758
7V08|1|1|U|2759
*
7V08|1|1|A|2801
7V08|1|1|A|2802
7V08|1|1|A|2803
7V08|1|1|A|2804
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain w
- Ribosome biogenesis regulatory protein
Coloring options: