J4_7VNV_002

3D structure

PDB id

7VNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNAVal from Sulfolobus Tokodaii

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

G(4SU)C(2MG)*C(M2G)C*GAGG(9QV)(5MC)(5MC)*GC

Length

16 nucleotides

Bulged bases

7VNV|1|B|4SU|8, 7VNV|1|B|C|9, 7VNV|1|B|5MC|48

QA status

Modified nucleotides: 4SU, 2MG, M2G, 9QV, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7VNV_002 not in the Motif Atlas

Homologous match to J4_1H4S_001

Geometric discrepancy: 0.3577

The information below is about J4_1H4S_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

7VNV|1|B|G|7
7VNV|1|B|4SU|8
7VNV|1|B|C|9
7VNV|1|B|2MG|10
*
7VNV|1|B|C|25
7VNV|1|B|M2G|26
7VNV|1|B|C|27
*
7VNV|1|B|G|43
7VNV|1|B|A|44
7VNV|1|B|G|45
7VNV|1|B|G|46
7VNV|1|B|9QV|47
7VNV|1|B|5MC|48
7VNV|1|B|5MC|49
*
7VNV|1|B|G|65
7VNV|1|B|C|66

Current chains

Chain B

RNA (78-MER)

Nearby chains