J4_7XAM_002

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7XAM_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1163

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7XAM|1|A|G|378
7XAM|1|A|G|379
7XAM|1|A|A|380
7XAM|1|A|A|381
7XAM|1|A|A|382
*
7XAM|1|A|U|398
7XAM|1|A|G|399
7XAM|1|A|C|400
7XAM|1|A|C|401
*
7XAM|1|A|G|405
7XAM|1|A|A|406
7XAM|1|A|C|407
*
7XAM|1|A|G|419
7XAM|1|A|G|420
7XAM|1|A|U|421
7XAM|1|A|A|422
7XAM|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24