J4_7XAM_009

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7XAM_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.1277

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7XAM|1|A|A|2867
7XAM|1|A|A|2868
7XAM|1|A|C|2869
7XAM|1|A|C|2870
*
7XAM|1|A|G|2898
7XAM|1|A|A|2899
7XAM|1|A|C|2900
*
7XAM|1|A|G|2955
7XAM|1|A|G|2956
7XAM|1|A|A|2957
7XAM|1|A|C|2958
7XAM|1|A|A|2959
*
7XAM|1|A|U|2993
7XAM|1|A|C|2994
7XAM|1|A|U|2995

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain L

50S ribosomal protein L14