J4_7XNX_001
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUAG*CAUC*GGAGACC*GU
- Length
- 17 nucleotides
- Bulged bases
- 7XNX|1|CC|U|8, 7XNX|1|CC|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7XNX_001 not in the Motif Atlas
- Homologous match to J4_4V90_004
- Geometric discrepancy: 0.4777
- The information below is about J4_4V90_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7XNX|1|CC|A|7
7XNX|1|CC|U|8
7XNX|1|CC|A|9
7XNX|1|CC|G|10
*
7XNX|1|CC|C|25
7XNX|1|CC|A|26
7XNX|1|CC|U|27
7XNX|1|CC|C|28
*
7XNX|1|CC|G|42
7XNX|1|CC|G|43
7XNX|1|CC|A|44
7XNX|1|CC|G|45
7XNX|1|CC|A|46
7XNX|1|CC|C|47
7XNX|1|CC|C|48
*
7XNX|1|CC|G|64
7XNX|1|CC|U|65
Current chains
- Chain CC
- tRNA
Nearby chains
- Chain Lo
- 60S ribosomal protein L36a
- Chain SF
- 40S ribosomal protein S5
Coloring options: