J4_7XNX_008

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7XNX|1|L1|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|G|2618
7XNX|1|L1|G|2619
*
7XNX|1|L1|U|2637
7XNX|1|L1|G|2638
7XNX|1|L1|U|2639
7XNX|1|L1|G|2640
7XNX|1|L1|A|2641
7XNX|1|L1|A|2642
*
7XNX|1|L1|U|2692
7XNX|1|L1|G|2693
7XNX|1|L1|G|2694
7XNX|1|L1|A|2695
7XNX|1|L1|A|2696
7XNX|1|L1|A|2697
7XNX|1|L1|G|2698
*
7XNX|1|L1|U|2718
7XNX|1|L1|C|2719

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38