J4_7XNX_016

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUAG*CAU*GAGACC*GU

Length

15 nucleotides

Bulged bases

7XNX|1|CC|U|8, 7XNX|1|CC|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7XNX_016 not in the Motif Atlas

Homologous match to J4_6UFH_001

Geometric discrepancy: 0.3422

The information below is about J4_6UFH_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

7XNX|1|CC|A|7
7XNX|1|CC|U|8
7XNX|1|CC|A|9
7XNX|1|CC|G|10
*
7XNX|1|CC|C|25
7XNX|1|CC|A|26
7XNX|1|CC|U|27
*
7XNX|1|CC|G|43
7XNX|1|CC|A|44
7XNX|1|CC|G|45
7XNX|1|CC|A|46
7XNX|1|CC|C|47
7XNX|1|CC|C|48
*
7XNX|1|CC|G|64
7XNX|1|CC|U|65

Current chains

Chain CC

tRNA

Nearby chains

Chain Lo

60S ribosomal protein L36a