J4_7Y41_002

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y41_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1125

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7Y41|1|A|G|378
7Y41|1|A|G|379
7Y41|1|A|A|380
7Y41|1|A|A|381
7Y41|1|A|A|382
*
7Y41|1|A|U|398
7Y41|1|A|G|399
7Y41|1|A|C|400
7Y41|1|A|C|401
*
7Y41|1|A|G|405
7Y41|1|A|A|406
7Y41|1|A|C|407
*
7Y41|1|A|G|419
7Y41|1|A|G|420
7Y41|1|A|U|421
7Y41|1|A|A|422
7Y41|1|A|C|423

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24