J4_7Y41_008

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7Y41|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y41_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1162

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7Y41|1|A|C|2050
7Y41|1|A|U|2051
7Y41|1|A|G|2052
*
7Y41|1|A|C|2129
7Y41|1|A|G|2130
*
7Y41|1|A|C|2148
7Y41|1|A|C|2149
7Y41|1|A|U|2150
7Y41|1|A|A|2151
7Y41|1|A|A|2152
7Y41|1|A|G|2153
7Y41|1|A|G|2154
7Y41|1|A|U|2155
7Y41|1|A|A|2156
7Y41|1|A|G|2157
*
7Y41|1|A|C|2191
7Y41|1|A|G|2192
7Y41|1|A|A|2193
7Y41|1|A|A|2194
7Y41|1|A|U|2195
7Y41|1|A|G|2196

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2