J4_7Y41_010

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y41_010 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.1375

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7Y41|1|A|A|2867
7Y41|1|A|A|2868
7Y41|1|A|C|2869
7Y41|1|A|C|2870
*
7Y41|1|A|G|2898
7Y41|1|A|A|2899
7Y41|1|A|C|2900
*
7Y41|1|A|G|2955
7Y41|1|A|G|2956
7Y41|1|A|A|2957
7Y41|1|A|C|2958
7Y41|1|A|A|2959
*
7Y41|1|A|U|2993
7Y41|1|A|C|2994
7Y41|1|A|U|2995

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13

Chain L

50S ribosomal protein L14