J4_7Y7E_007

3D structure

PDB id

7Y7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7E_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0512

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7Y7E|1|a|G|297
7Y7E|1|a|G|298
7Y7E|1|a|A|299
7Y7E|1|a|A|300
7Y7E|1|a|G|301
*
7Y7E|1|a|C|316
7Y7E|1|a|G|317
7Y7E|1|a|C|318
7Y7E|1|a|G|319
*
7Y7E|1|a|C|323
7Y7E|1|a|A|324
7Y7E|1|a|G|325
*
7Y7E|1|a|C|337
7Y7E|1|a|G|338
7Y7E|1|a|U|339
7Y7E|1|a|A|340
7Y7E|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24