J4_7Y7F_010

3D structure

PDB id

7Y7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7Y7F|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Y7F_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0489

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Y7F|1|a|G|1310
7Y7F|1|a|G|1311
7Y7F|1|a|U|1312
7Y7F|1|a|U|1313
7Y7F|1|a|C|1314
*
7Y7F|1|a|G|1338
7Y7F|1|a|G|1339
7Y7F|1|a|U|1340
7Y7F|1|a|G|1341
7Y7F|1|a|A|1342
7Y7F|1|a|G|1343
*
7Y7F|1|a|C|1404
7Y7F|1|a|U|1405
*
7Y7F|1|a|A|1597
7Y7F|1|a|A|1598
7Y7F|1|a|U|1599
7Y7F|1|a|C|1600
7Y7F|1|a|G|1601
7Y7F|1|a|U|1602
7Y7F|1|a|A|1603
7Y7F|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23