J4_7YLA_002

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7YLA_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0574

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7YLA|1|I|G|297
7YLA|1|I|G|298
7YLA|1|I|A|299
7YLA|1|I|A|300
7YLA|1|I|G|301
*
7YLA|1|I|C|316
7YLA|1|I|G|317
7YLA|1|I|C|318
7YLA|1|I|G|319
*
7YLA|1|I|C|323
7YLA|1|I|A|324
7YLA|1|I|G|325
*
7YLA|1|I|C|337
7YLA|1|I|G|338
7YLA|1|I|U|339
7YLA|1|I|A|340
7YLA|1|I|C|341

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain M

50S ribosomal protein L4

Chain c

50S ribosomal protein L24