3D structure

PDB id
7YLA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-HflX complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.52 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7YLA|1|I|U|653, 7YLA|1|I|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7YLA_003 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.131
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7YLA|1|I|C|601
7YLA|1|I|A|602
7YLA|1|I|A|603
7YLA|1|I|G|604
*
7YLA|1|I|C|624
7YLA|1|I|G|625
7YLA|1|I|A|626
7YLA|1|I|A|627
7YLA|1|I|G|628
*
7YLA|1|I|C|635
7YLA|1|I|G|636
7YLA|1|I|A|637
7YLA|1|I|G|638
*
7YLA|1|I|C|650
7YLA|1|I|G|651
7YLA|1|I|U|652
7YLA|1|I|U|653
7YLA|1|I|A|654
7YLA|1|I|A|655
7YLA|1|I|G|656

Current chains

Chain I
Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15
Chain l
50S ribosomal protein L35

Coloring options:


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